PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG419900.3.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 342aa    MW: 38614.1 Da    PI: 7.7213
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG419900.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.20.0003422511445
                         HHHHHHHHHHHCTSCCC...TTS-.STCHHHHH CS
                  HLH 14 driNsafeeLrellPkaskapskK.lsKaeiLe 45
                         ++i ++++eLr +l ++   +++K  s +++L+
  Pavir.3KG419900.3.p 22 ENISERIQELRAMLASS---KKRKeRSSSQTLR 51
                         79**************9...88888*******8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF540011.67E-10127326No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MEIEKGLAYC SEGVTTIQNW CENISERIQE LRAMLASSKK RKERSSSQTL RTPPFALDLS  60
GTSPEEDIMK GKTTHASAGG GSSSGREATS QRLYPNLKSY IVWVDVKGRL PVRLTGNQIK  120
MGILKPVELD SNIIAATVRL LSEFERNMIL HRSNGASRHY IPPEWTSYVT AGNFEAHISE  180
QYFKNSPTGY DLTTCNMLLA PVRFGQGWSC YAINVPESTL TVMDPFLKAD AGNIRIQWHQ  240
ITARKVLEEA IRCFDIVRSV DTAETTKWKV NIQLLTEVKC CTWDTGIYTM TCMRWYEPEV  300
DVSIIRLDER TAYEARKQLA HDLINMECNH AQLPHRLPTS T*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-